575 items found

Organisations: ORION Knowledge Hub Formats: Shared Definition

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  • GlossaryTerm

    Reference Mapping

    Alignment of DNA fragments to a closely related reference genome to create a representative of the original DNA sample
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  • GlossaryTerm

    Decision Tree

    A decision tree is a decision support tool that uses a tree-like model of decisions and their possible consequences, including chance event outcomes, resource costs, and...
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  • GlossaryTerm

    Sequence alignment

    An algorithmic approach to find the best matching of consecutive letters in one sequence (text symbols that represent the polymer subunits of DNA or protein sequences) with...
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  • GlossaryTerm

    Globalization

    The increased interconnectedness and interdependence of peoples and countries, is generally understood to include two interrelated elements: the opening of borders to...
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  • GlossaryTerm

    Sequence Data

    The raw reads produced from basecalling, usually saved in FASTQ format for NGS data.
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  • GlossaryTerm

    Whole Genome MLST(WGMLST)

    Consist of a fixed set of species specific genes, also including variable and transfeerable loci.
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  • GlossaryTerm

    Stability and sustainability

    The ability to function without failure (reliability), the ability to be operational when needed (availability) and the robustness and ability of the system to be ongoing in the...
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  • GlossaryTerm

    One Health (OH) Knowledge Base NGS

    Cross-domain inventory of currently available data/methods/algorithms/tools/systems linked to existing and novel NextGen bacterial identification (primarily NGS) analysis methods
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  • GlossaryTerm

    Surveillance Pathway

    Describes the steps in the surveillance i.e. design adjustment and optimization of the surveillance programme/system; sample collection; laboratory analysis; data transfer and...
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  • GlossaryTerm

    Contingency Plan

    An emergency preparedness plan specific to a single zoonotic disease.
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  • GlossaryTerm

    Subspecies

    In bacterial taxonomy subgroups of a species that differ in their phenotypic or genotypic characteristics.
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  • GlossaryTerm

    In Silico Serotype

    The use of one or several molecular methods to derive the serotype (examples PCR and/or sequencing)
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  • GlossaryTerm

    Population

    a population is a group of people with a common characteristic.
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  • GlossaryTerm

    Antibiotic

    A substance produced by or derived from a microorganism, which destroys or inhibits the growth of other microorganisms.
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  • GlossaryTerm

    Epidemiological watch

    See: Early warning surveillance
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  • GlossaryTerm

    Tick Borne Encephalitis

    vector-borne zoonotic disease, spread by ticks, can be found in humans, domestic and wild animals
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  • GlossaryTerm

    Knowledge graph

    The Knowledge Graph is a knowledge base, i.e. a technology used to store complex structured and unstructured information used by a computer system. Knowledge graph is used by...
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  • GlossaryTerm

    Vector Competence

    ability of arthropods to acquire, maintain, and transmit microbial agents. Not all blood-sucking arthropods are vectors (transmitters) of disease agents.
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  • GlossaryTerm

    Continuous Data

    Data (variable) with a potentially infinite number of possible values along a continuum (e.g., height, weight, enzyme output)
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  • GlossaryTerm

    Excretory

    Of, relating to, or used in excretion: excretory organs.
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