RPrototypingLab Virtual Research Environment
The RPrototypingLab is conceived to provide its users with a complete
development and integration environment for R. In particular, the
environment is powered by RStudio®, an open source development environment
including a code editor, and debugging and visualization tools. Moreover,
this VRE is powered by the gCube data analytics platform and allows to
perform the following tasks: Integrate R algorithms into the platform
Execute integrated algorithms by benefitting from a distributed computing
infrastructure Automatically generate research objects out of any
computation In addition to the basic functionalities, as a workspace for
sharing objects of interest, a social networking area for supporting the
discussions among members and a user management facility for managing
membership, this VLab is specifically equipped with the following
capabilities: Species Data Discovery: a facility enabling users to discover
and manage species data products (occurrence data and taxonomic data) from
a number of heterogeneous providers (including GBIF and speciesLink for
occurrences data as well as ASFIS, BrazilianFlora, CatalogueOfLife, IRMNG,
IT IS, NCBI, WoRDSS, WoRMS for taxonomic data) in a seamless way. Once
discovered, objects can be stored in the workspace for future uses Species
View: a facility enabling users to discover and browse species distribution
maps. This facility supports discovery mechanisms ranging from simple
search based on species names to very specific search criterion, and it
offers a comprehensive set of products visualisation approaches Geospatial
Data View: a facility enabling users to discover and visualize GIS layers,
e.g. species distribution maps that have been generated and published. This
facility relies on the GeoExplorer portlet and makes it possible to
effectively exploit the generated maps and perform comparisons and analysis
of the diverse distributions by enabling maps overlay, transects production
and values inspection Data Analytics at Scale: a facility enabling users to
benefit from the offering of the DataMiner service and interactively
execute a large array of data analytics tasks on datasets. These algorithms
range from trajectory simulations based on the Ichthyop model to Virtual
Population Analysis (VPA) Algorithms, spatial reallocation, ensemble
model-based approaches Algorithm Importer: a facility enabling users to
transform R-based algorithms and methods into DataMiner algorithms, i.e.
methods that can be executed by the data analytics platform. This
transformation assists in annotating the code thus making it possible for
Data Miner to properly execute it R Studio as-a-Service: a facility
enabling users to access a fully-fledged RStudio® working environment
directly from the VRE. This environment is integrated with the rest of VRE
\ VLab facilities enabling the usage of files from the workspace and the
storage of new files into the workspace