Attributing Salmonellosis to food sources and water in Latin America and the Caribbean using data from outbreak investigations (Salmonella)
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Model scope
Field | Value |
---|---|
Hazard | Salmonella |
Hazard | Salmonella |
Hazard | Salmonella |
Hazard | Salmonella |
Hazard | Salmonella |
Hazard | Salmonella |
Hazard | Salmonella |
Hazard | Salmonella |
Hazard | Salmonella |
Hazard | Salmonella |
Hazard | Salmonella |
Hazard | Salmonella |
Product | Meat preparations of meat offals blood animal fats fresh chilled or frozen salted in brine |
Product | Meat preparations of meat offals blood animal fats fresh chilled or frozen salted in brine |
Product | Swine |
Product | Bovine |
Product | Poultry chicken geese duck turkey and Guinea fowl ostrich pigeon Others |
Product | Poultry chicken geese duck turkey and Guinea fowl ostrich pigeon Others |
Product | Poultry chicken geese duck turkey and Guinea fowl ostrich pigeon Others |
Product | Poultry chicken geese duck turkey and Guinea fowl ostrich pigeon Others |
Product | Meat preparations of meat offals blood animal fats fresh chilled or frozen salted in brine |
Product | Dairy products Goat |
Product | Dairy products Others |
Product | Eggs Chicken |
Model parameters
Field | Value |
---|---|
Input Parameter | Initial values of the PriorS: []( Vector[number]), Default: c(0.1, 0.01, 0.2, 0.05, 0.3) |
Input Parameter | Number of product sources: []( Integer), Default: 19 |
Input Parameter | Outbreaks data: []( File), Default: read.csv(Salmonella-all.csv, header=TRUE, as.is=TRUE, dec=,, sep=;) |
Input Parameter | Number of burn-in iterations: []( Integer), Default: 0 |
Input Parameter | Number of Gibbs chains: []( Integer), Default: 5 |
Input Parameter | Number of Gibbs iterations per chain: []( Integer), Default: 20 |
Output Parameter | Proportions of outbreaks with unknown source (mean): %( Vector[number]) |
Output Parameter | Proportion of disease attributed to each source per time period (mean, sd, 2.5th percentile, median and 97.5th percentile of all simulated values): %( Matrix[number,number]) |
Output Parameter | Probability that an outbreak was caused by a specific source (mean, sd, 2.5th percentile, median and 97.5th percentile of all simulated values): [Probability]( Vector[number]) |
Output Parameter | Number of time periods (decades/years/etc): []( Integer) |
Additional Info
Field | Value |
---|---|
Model Author | Nauta, Maarten, [email protected] |
Model Creator | Stylianos, [email protected] |
Model ID | PiresOutbLA2011-Salmonella |
Model Language | R 3 |
ReadMe | This model is made available in the FSK-ML format, i.e. as .fskx file. To execute the model or to perform model-based predictions it is recommended to use the software FSK-Lab. FSK-Lab is an open-source extension of the open-source data analytics platform KNIME. To install FSK-Lab follow the installation instructions available at: https://foodrisklabs.bfr.bund.de/fsk-lab_de/. Once FSK-Lab is installed a new KNIME workflow should be created and the FSKX Reader node should be dragged into it. This FSKX Reader node can be configured to read in the given .fskx file. To perform a model-based prediction connect the out-port of the FSKX Reader node with the FSK Simulation Configurator JS node to adjust if necessary input parameters and store this into a user defined simulation setting, After that connect the output port with the input of a FSK Runner node that perform the simulation and look at the results at the node's outport. |
Reference Description | Attributing human foodborne illness to food sources and water in Latin America and the Caribbean using data from outbreak investigations DOI: https://doi.org/10.1016/j.ijfoodmicro.2011.04.018 |
system:type | FSKXModel |
Management Info
Field | Value |
---|---|
Author | thomas_schueler |
Last Updated | 3 February 2021, 17:09 (CET) |
Created | 17 September 2019, 14:32 (CEST) |