ICES TCSSM Virtual Research Environment
This VLab was conceived and used to support the ICES training course on
Social Science Methods for Natural Scientists (Date: 29-28 May 2016,
Location: Brest, France). The objective of the course was to provide
participants with a solid foundation for working effectively with
stakeholders in (cooperative) research projects, as well as having a better
appreciation of the strengths and application of the social sciences in
fisheries research. In addition to the basic functionalities, as a
workspace for sharing objects of interest, a social networking area for
supporting the discussions among members and a user management facility for
managing membership, this VRE is specifically equipped with the following
capability: Tabular Data Management: a facility enabling users to import,
curate and manage tabular data. This feature can support data managers
during the whole life cycle of data management from data capture to
publication and visualisation. It enables data managers to import and
transform datasets (CSV, SDMX, JSON) into tabular resources (i.e. tabular
data having proper types associated with columns eventually referring to
code lists) and reference datasets (code lists) representing recognized
value instances of the elements the dataset is about (e.g., species, zones,
countries). This functionality guarantees that the tabular resources are
compliant with the defined types and code lists. Besides the curation, the
facility supports the analysis of the data by enabling a user to perform
operations like grouping and filtering, producing charts and GIS maps (if
the data have geographic features) and analysing the data via an R
environment as well as via the data analytics facilities. Finally, the
environment supports the publishing of tabular resources in the
infrastructure by equipping them with rich metadata so that such resources
can be used in other application contexts Data Analytics at Scale: a
facility enabling users to benefit from the offering of the DataMiner
service and interactively execute a large array of data analytics tasks on
datasets. These algorithms range from data clustering and anomalies
detection methods (e.g. DBScan and KMeans) to algorithms for manipulating
datasets from the geospatial perspective (e.g. transform FAO Area Code in
latitude and longitude) Species Data Discovery: facility enabling users to
discover and manage species data products (occurrence data and taxonomic
data) from a number of heterogeneous providers (including GBIF and
speciesLink for occurrences data, and ASFIS, BrazilianFlora,
CatalogueOfLife, IRMNG, IT IS, NCBI, WoRDSS, WoRMS for taxonomic data) in a
seamless way. Once discovered, objects can be stored in the workspace for
future uses Geospatial Data View: facility enabling users to discover and
visualize GIS layers, e.g. species distribution maps, Sea Surface
Temperature, that have been generated and/or published. This facility
relies on the GeoExplorer portlet and makes it possible to effectively
exploit the generated maps and perform comparisons and analysis of the
diverse distributions by enabling maps overlay, transects production and
values inspection